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Cheap flights from Cebu to Kota Kinabalu from ₱5,678

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 4/24. Fares are subject to change and may not be available on all flights or dates of travel.
CEB — BKI
Apr 19 — Apr 261
1 adult

Cheap flight deals from Cebu to Kota Kinabalu

Keep the following information in mind while searching for Cebu to Kota Kinabalu flight deals. Data was last updated April 14, 2025.

Round-trip from

₱9,822

One-way from

₱5,678

Popular in

June

Cheapest in

October

Average price

₱14,592
Philippines AirAsia
  • Philippines AirAsia
  • 5/28-6/5
  • 2 total stops
  • 42h 00m total
  • Cebu to Kota Kinabalu
Search Deals
Philippines AirAsia
  • Philippines AirAsia
  • 4/24
  • 1 total stop
  • 27h 30m total
  • Cebu to Kota Kinabalu
Search Deals
Highest demand for flights based on searches. 17% potential increase in price (₱152,155 potential increase over avg. RT price).
Search Deals
Cheapest flight prices on average. 8% potential price decrease (₱56,332 potential savings vs. average RT price).
Search Deals
Average for round-trip flights in April 2025
Search Deals

Find flight deals from Cebu to Kota Kinabalu

Cheapest flights from Cebu to Kota Kinabalu
Explore the most affordable flight options available from Cebu to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on April 14, 2025.

Wed 5/282:35 amCEB - BKI
1 stop20h 10mPhilippines AirAsia
Thu 6/511:20 pmBKI - CEB
1 stop21h 50mPhilippines AirAsia
Deal found 4/13₱9,822
Wed 5/288:50 pmCEB - BKI
2 stops25h 55mMultiple Airlines
Wed 6/411:20 pmBKI - CEB
1 stop21h 20mMultiple Airlines
Deal found 4/13₱10,958
Wed 4/309:15 amCEB - BKI
2 stops39h 25mPhilippine Airlines
Mon 5/510:20 pmBKI - CEB
2 stops30h 45mPhilippine Airlines
Deal found 4/13₱22,314
Wed 5/281:20 amCEB - BKI
1 stop22h 10mJeju Air
Wed 6/412:30 amBKI - CEB
1 stop23h 50mJeju Air
Deal found 4/13₱28,105

Cheapflights Fare Finder

Customize your flight search to find flights from Cebu to Kota Kinabalu that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 411,093 searches. Data last updated April 14, 2025.
Use the filters below to find and compare flights from Cebu to Kota Kinabalu that are best for you.

Fly from

Cebu

Fly to

Kota Kinabalu

Route

Depart

Return

Price

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Wed 5/28

2:35 am-10:45 pm

1 stop20h 10m

Kota Kinabalu

Thu 6/5

11:20 pm-9:10 pm

1 stop21h 50m

₱9,822

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Wed 5/28

8:50 pm-10:45 pm

2 stops25h 55m

Kota Kinabalu

Wed 6/4

11:20 pm-8:40 pm

1 stop21h 20m

₱10,958

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Wed 4/30

9:15 am-12:40 am

2 stops39h 25m

Kota Kinabalu

Mon 5/5

10:20 pm-5:05 am

2 stops30h 45m

₱22,314

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Wed 5/28

1:20 am-11:30 pm

1 stop22h 10m

Kota Kinabalu

Wed 6/4

12:30 am-12:20 am

1 stop23h 50m

₱28,105

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Thu 4/24

9:50 pm-1:20 am

1 stop27h 30m

₱5,678

Cebu CityKota Kinabalu

CEB - BKI

CEBBKI

Cebu City Mactan Intl

Wed 4/30

11:55 pm-1:20 am

1 stop25h 25m

₱6,586

Flights are sorted by cheapest round-trip flights first.

Deals found on 4/13

Best time to book a flight from Cebu to Kota Kinabalu

Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu from Cebu with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Cebu to Kota Kinabalu

What is the cheapest time of day to fly from CEB to BKI?

Find hourly flight availability from Cebu to Kota Kinabalu. Discover flight options and departure times throughout the day, allowing you to choose a departure time that suits your schedule. Data last updated April 14, 2025.

When flying from Cebu to Kota Kinabalu, the time of day you decide to fly out makes little to no difference towards the overall price you’ll pay on tickets.

Rainfall in Kota Kinabalu by month

Plan your trip to Kota Kinabalu by taking into account the average rainfall totals by month.

In terms of precipitation, rainfall in Kota Kinabalu ranges from 60.0 - 351.0 inches per month. October is typically the wettest month, when rainfall can reach 351.0 mm. February is typically the driest time to visit Kota Kinabalu when rainfall is around 60.0 mm.

Temperature in Kota Kinabalu by month

Plan your trip to Kota Kinabalu by taking into account the average temperature totals by month.

If weather is an important factor for your trip to Kota Kinabalu, use this chart to help with planning. For those seeking warmer temperatures, April is the ideal time of year to visit, when temperatures reach an average of 27.0 C. Travelers looking to avoid the cold should look outside of January, when temperatures are typically at their lowest (around 26.0 C).

Reviews of airlines servicing Kota Kinabalu

Get insights into the airlines that provide service to Kota Kinabalu. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to Kota Kinabalu. Reviews last updated April 14, 2025.
Philippine Airlines
7.2
Good
855 reviews
Check prices

Entertainment

6.6

Overall

7.2

Food

6.9

Boarding

7.2

Comfort

7.1

Crew

7.9

Reviews

1 / 20
6.0
Good

Anonymous,Aug 2024

MNL - LAX

At this time too many hassled in check -in in the front counter.scheduled time was moved to 2hrs early not happy with it and other customers.might change airlines next travel.
Philippine Airlines
7.2
Good
855 reviews
Philippine Airlines
7.2
Good
855 reviews
Check prices

Entertainment

6.6

Overall

7.2

Food

6.9

Boarding

7.2

Comfort

7.1

Crew

7.9

Reviews

1 / 20
6.0
Good

Anonymous,Aug 2024

MNL - LAX

At this time too many hassled in check -in in the front counter.scheduled time was moved to 2hrs early not happy with it and other customers.might change airlines next travel.
Philippines AirAsia
6.7
Okay
111 reviews
Philippine Airlines
7.2
Good
855 reviews
Check prices

Entertainment

6.6

Overall

7.2

Food

6.9

Boarding

7.2

Comfort

7.1

Crew

7.9

Reviews

1 / 20
6.0
Good

Anonymous,Aug 2024

MNL - LAX

At this time too many hassled in check -in in the front counter.scheduled time was moved to 2hrs early not happy with it and other customers.might change airlines next travel.

Related info for your journey

Find useful and relevant information for your journey from Cebu to Kota Kinabalu. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • What airport do you fly into for flights to Kota Kinabalu from Cebu?

    Most people fly into Kota Kinabalu (BKI) if they book a flight to Kota Kinabalu from Cebu. Kota Kinabalu is conveniently located just 5.8 km from Kota Kinabalu’s city center.

  • Can I find deals for flights from Cebu to Kota Kinabalu that include hotel bookings?

    Yes. In addition to deals on Cebu to Kota Kinabalu flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from Cebu to Kota Kinabalu?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Cebu to Kota Kinabalu.

  • Can I find deals for business class flights from Cebu to Kota Kinabalu?

    Yes. Cheapflights offers flight deals from Cebu to Kota Kinabalu by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

  • What is the cheapest month to book a flight from Cebu to Kota Kinabalu?

    Currently, January is the cheapest month in which you can book a flight from Cebu to Kota Kinabalu (average of ₱83). Flying from Cebu to Kota Kinabalu in October is currently the most expensive (average of ₱119). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

See more FAQs

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Alternative routes for Cebu to Kota Kinabalu

See prices for flight routes from nearby airports that may be better suited for you.
Manila to Kota Kinabalu flights
Davao City to Kota Kinabalu flights
Zamboanga City to Kota Kinabalu flights

Top airline flying from Cebu to Kota Kinabalu

Discover the top airline that operate flights from Cebu to Kota Kinabalu. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 411,093 searches. Data last updated April 14, 2025.
AirlineCheapestAverageFlexibilityOn-time
Philippines AirAsiaCheapest₱9,525Average₱10,751FlexibilityNo cancel feeOn-time53%
Search Philippines AirAsia flights

Fly with Cheapflights

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Can Cheapflights find flights from Cebu to Kota Kinabalu with no change fees?

Need flexible booking options for your flight to Kota Kinabalu from Cebu? Don’t worry, Cheapflights have you covered. Use our search filter to only show flights with no change fees.

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