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Cheap flights from Manila to Kota Kinabalu from ₱2,865

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 4/21. Fares are subject to change and may not be available on all flights or dates of travel.
MNL — BKI
Mar 29 — Apr 51
1 adult

Cheapflights Tip: The best prices from Manila Ninoy Aquino Intl to Kota Kinabalu are usually found in November or June, booked 87 days in advance, depart on a Friday or Thursday and return on a Thursday

Cheap flight deals from Manila to Kota Kinabalu

Discover tips and strategies to find the most affordable flight options for your journey from Manila (MNL) to Kota Kinabalu (BKI). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated March 24, 2025.

Round-trip from

₱6,991

One-way from

₱2,865

Popular in

January

Cheapest in

November

Average price

₱7,049

Good round-trip deal

₱7,060 or less

Good one-way deal

₱3,331 or less
Philippines AirAsia
  • Philippines AirAsia
  • 6/17-7/15
  • Nonstop
  • 4h 20m total
  • Manila to Kota Kinabalu
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Philippines AirAsia
  • Philippines AirAsia
  • 4/21
  • Nonstop
  • 2h 10m total
  • Manila to Kota Kinabalu
Search Deals
Highest demand for flights based on searches. 7% potential increase in price (₱33,638 potential increase over avg. RT price).
Search Deals
Cheapest flight prices on average. 0% potential price decrease (₱4,012 potential savings vs. average RT price).
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Average for round-trip flights in March 2025
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Price to beat on a round-trip flight from Manila Ninoy Aquino Intl to Kota Kinabalu.
Search Deals
Price to beat on a one-way flight from Manila Ninoy Aquino Intl to Kota Kinabalu.
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Find flight deals from Manila to Kota Kinabalu

Cheapest flights from Manila to Kota Kinabalu
Explore the most affordable flight options available from Manila to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on March 24, 2025.

Tue 6/1711:10 pmMNL - BKI
Nonstop2h 10mPhilippines AirAsia
Tue 7/151:45 amBKI - MNL
Nonstop2h 10mPhilippines AirAsia
Deal found 3/23₱6,991
Sun 7/1311:10 pmMNL - BKI
Nonstop2h 10mMultiple Airlines
Thu 7/1712:15 pmBKI - MNL
1 stop17h 25mMultiple Airlines
Deal found 3/22₱7,564
Sun 7/137:35 pmMNL - BKI
1 stop23h 50mScoot
Thu 7/1712:15 pmBKI - MNL
1 stop17h 25mScoot
Deal found 3/22₱8,825
Wed 10/87:40 amMNL - BKI
1 stop11h 45mSingapore Airlines
Mon 10/138:25 pmBKI - MNL
1 stop21h 00mSingapore Airlines
Deal found 3/22₱14,728
Thu 5/89:35 pmMNL - BKI
1 stop23h 20mRoyal Brunei Airlines
Sun 5/259:20 pmBKI - MNL
1 stop23h 25mRoyal Brunei Airlines
Deal found 3/22₱14,900
Sat 4/125:45 pmMNL - BKI
1 stop24h 35mChina Southern
Wed 4/167:20 pmBKI - MNL
1 stop27h 55mChina Southern
Deal found 3/23₱16,905
Sat 4/126:50 amMNL - BKI
2 stops13h 05mMalaysia Airlines
Wed 4/1610:20 pmBKI - MNL
1 stop23h 05mMalaysia Airlines
Deal found 3/23₱22,464
Tue 6/1711:20 pmMNL - BKI
1 stop24h 10mJeju Air
Sat 7/1212:30 amBKI - MNL
1 stop21h 50mJeju Air
Deal found 3/23₱23,266
Sat 5/103:55 amMNL - BKI
1 stop20h 35mChina Eastern
Tue 5/131:30 amBKI - MNL
1 stop23h 50mChina Eastern
Deal found 3/22₱31,862
Wed 10/811:20 pmMNL - BKI
1 stop24h 10mHahn Air Systems
Sun 10/1212:30 amBKI - MNL
1 stop21h 50mHahn Air Systems
Deal found 3/23₱63,438

Cheapflights Fare Finder

Customize your flight search to find flights from Manila to Kota Kinabalu that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 411,093 searches. Data last updated March 24, 2025.
Use the filters below to find and compare flights from Manila to Kota Kinabalu that are best for you.

Fly from

Manila

Fly to

Kota Kinabalu

Route

Depart

Return

Price

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Tue 6/17

11:10 pm-1:20 am

Nonstop2h 10m

Kota Kinabalu

Tue 7/15

1:45 am-3:55 am

Nonstop2h 10m

₱6,991

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Sun 7/13

11:10 pm-1:20 am

Nonstop2h 10m

Kota Kinabalu

Thu 7/17

12:15 pm-5:40 am

1 stop17h 25m

₱7,564

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Sun 7/13

7:35 pm-7:25 pm

1 stop23h 50m

Kota Kinabalu

Thu 7/17

12:15 pm-5:40 am

1 stop17h 25m

₱8,825

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Thu 5/8

9:35 pm-8:55 pm

1 stop23h 20m

Kota Kinabalu

Sun 5/25

9:20 pm-8:45 pm

1 stop23h 25m

₱14,900

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Sat 4/12

5:45 pm-6:20 pm

1 stop24h 35m

Kota Kinabalu

Wed 4/16

7:20 pm-11:15 pm

1 stop27h 55m

₱16,905

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Sat 4/12

6:50 am-7:55 pm

2 stops13h 05m

Kota Kinabalu

Wed 4/16

10:20 pm-9:25 pm

1 stop23h 05m

₱22,464

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Tue 6/17

11:20 pm-11:30 pm

1 stop24h 10m

Kota Kinabalu

Sat 7/12

12:30 am-10:20 pm

1 stop21h 50m

₱23,266

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Sat 5/10

3:55 am-12:30 am

1 stop20h 35m

Kota Kinabalu

Tue 5/13

1:30 am-1:20 am

1 stop23h 50m

₱31,862

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Mon 4/21

11:10 pm-1:20 am

Nonstop2h 10m

₱2,865

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 5/28

6:55 am-7:25 pm

1 stop12h 30m

₱4,814

Flights are sorted by cheapest round-trip flights first.

Deals found on 3/23

Showing 1-10 of 14 results
1
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Best time to book a flight from Manila to Kota Kinabalu

Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu from Manila with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Manila to Kota Kinabalu

How far ahead should I book a flight from Manila to Kota Kinabalu?

Use this chart to determine the optimal time to book a round-trip flight from Manila to Kota Kinabalu. Price data was last updated on March 21, 2025.

The price you pay for your flight from Manila to Kota Kinabalu may vary depending on when you book. For the best chance of a lower fare, look to book 21 days in advance of your trip. Fares are likely to increase a fortnight or so before your departure date.

What is the cheapest month to book a flight from Manila to Kota Kinabalu?

Currently, January is the cheapest month in which you can book a flight from Manila to Kota Kinabalu (average of ₱83). Flying from Manila to Kota Kinabalu in October is currently the most expensive (average of ₱119). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

What is the cheapest time of day to fly from MNL to BKI?

Find hourly flight availability from Manila to Kota Kinabalu. Discover flight options and departure times throughout the day, allowing you to choose a departure time that suits your schedule. Data last updated March 24, 2025.

It’s typically best to fly out from Manila to Kota Kinabalu in the morning. Doing so could potentially save you 46% on the flight price compared to flying at noon, which is usually more expensive.

Rainfall in Kota Kinabalu by month

Plan your trip to Kota Kinabalu by taking into account the average rainfall totals by month.

In terms of precipitation, rainfall in Kota Kinabalu ranges from 60.0 - 351.0 inches per month. October is typically the wettest month, when rainfall can reach 351.0 mm. February is typically the driest time to visit Kota Kinabalu when rainfall is around 60.0 mm.

Temperature in Kota Kinabalu by month

Plan your trip to Kota Kinabalu by taking into account the average temperature totals by month.

If weather is an important factor for your trip to Kota Kinabalu, use this chart to help with planning. For those seeking warmer temperatures, April is the ideal time of year to visit, when temperatures reach an average of 27.0 C. Travelers looking to avoid the cold should look outside of January, when temperatures are typically at their lowest (around 26.0 C).

Reviews of airlines servicing Kota Kinabalu

Get insights into the airlines that provide service to Kota Kinabalu. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to Kota Kinabalu. Reviews last updated March 24, 2025.
China Southern
7.5
Good
90 reviews
Check prices

Crew

8.3

Entertainment

7.5

Food

7.4

Comfort

7.8

Overall

7.5

Boarding

8.0

Reviews

1 / 1
6.0
Good

Teak,Jun 2024

CAN - NRT

Boarding system very poor too much waiting and no system
China Southern
7.5
Good
90 reviews
China Southern
7.5
Good
90 reviews
Check prices

Crew

8.3

Entertainment

7.5

Food

7.4

Comfort

7.8

Overall

7.5

Boarding

8.0

Reviews

1 / 1
6.0
Good

Teak,Jun 2024

CAN - NRT

Boarding system very poor too much waiting and no system
Malaysia Airlines
7.3
Good
251 reviews
China Southern
7.5
Good
90 reviews
Check prices

Crew

8.3

Entertainment

7.5

Food

7.4

Comfort

7.8

Overall

7.5

Boarding

8.0

Reviews

1 / 1
6.0
Good

Teak,Jun 2024

CAN - NRT

Boarding system very poor too much waiting and no system
China Eastern
7.1
Good
135 reviews
China Southern
7.5
Good
90 reviews
Check prices

Crew

8.3

Entertainment

7.5

Food

7.4

Comfort

7.8

Overall

7.5

Boarding

8.0

Reviews

1 / 1
6.0
Good

Teak,Jun 2024

CAN - NRT

Boarding system very poor too much waiting and no system
Scoot
6.7
Okay
302 reviews
China Southern
7.5
Good
90 reviews
Check prices

Crew

8.3

Entertainment

7.5

Food

7.4

Comfort

7.8

Overall

7.5

Boarding

8.0

Reviews

1 / 1
6.0
Good

Teak,Jun 2024

CAN - NRT

Boarding system very poor too much waiting and no system

Related info for your journey

Find useful and relevant information for your journey from Manila to Kota Kinabalu. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • How popular is this Manila to Kota Kinabalu flight route?

    This flight path from Manila Ninoy Aquino Intl to Kota Kinabalu was viewed by 1,031 users in the past month. Keep an eye out for changes in search interest prior to high and low season.

  • What are the cheapest airlines flying from Manila to Kota Kinabalu round-trip?

    Flying on Philippines AirAsia is currently your cheapest option to Kota Kinabalu, with prices starting at ₱6,991. Additional round-trip tickets that might be worth considering are offered by Scoot and Royal Brunei Airlines, with the lowest prices starting at ₱8,825 and ₱14,900, respectively. You may be able to fly from Manila to Kota Kinabalu for 2% less than the average price by searching for these airlines.

  • What are the cheapest airlines to fly from Manila to Kota Kinabalu one-way?

    ₱2,865 is the cheapest one-way deal found within the past few days, from Philippines AirAsia. You may also be able to find cheap deals on Scoot and AirAsia, with prices starting from ₱4,814 and ₱6,418, respectively.

  • What are the cheapest flights from Manila to Kota Kinabalu?

    On average you can expect to pay ₱5,995 for a flight from Manila to Kota Kinabalu. The cheapest flight overall is ₱3,180 while the most popular route, (Manila Ninoy Aquino Intl - Kota Kinabalu) is currently priced at ₱5,616.

  • Can I find deals for flights from Manila to Kota Kinabalu that include hotel bookings?

    Yes. In addition to deals on Manila to Kota Kinabalu flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from Manila to Kota Kinabalu?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Manila to Kota Kinabalu.

  • Can I find deals for business class flights from Manila to Kota Kinabalu?

    Yes. Cheapflights offers flight deals from Manila to Kota Kinabalu by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

  • What is the cheapest month to book a flight from Manila to Kota Kinabalu?

    Currently, January is the cheapest month in which you can book a flight from Manila to Kota Kinabalu (average of ₱83). Flying from Manila to Kota Kinabalu in October is currently the most expensive (average of ₱119). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

See more FAQs

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Fly from Manila to Kota Kinabalu on these airlines

Choose from the following airlines for your flight from Manila to Kota Kinabalu. Flights are based on user searches made on Cheapflights and were last updated on March 24, 2025.
Philippines AirAsia flights from Manila Ninoy Aquino Intl to Kota Kinabalu
Scoot flights from Manila Ninoy Aquino Intl to Kota Kinabalu

Top 5 airlines flying from Manila to Kota Kinabalu

Discover the top 5 airlines that operate flights from Manila to Kota Kinabalu. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 411,093 searches. Data last updated March 24, 2025.
AirlineCheapestAverageFlexibilityOn-time
Philippines AirAsiaCheapest₱4,915Average₱6,922FlexibilityNo cancel feeOn-time53%
Search Philippines AirAsia flights
ScootCheapest₱8,744Average₱10,614FlexibilityNo cancel feeOn-timeN/A
Search Scoot flights
AirAsiaCheapest₱10,501Average₱14,719FlexibilityNo cancel feeOn-time66%
Search AirAsia flights
Philippine AirlinesCheapest₱16,887Average₱19,933FlexibilityNo cancel feeOn-time60%
Search Philippine Airlines flights
Malaysia AirlinesCheapest₱17,955Average₱24,585FlexibilityNo cancel feeOn-time67%
Search Malaysia Airlines flights

Fly with Cheapflights

Find the best flight deals on Cheapflights, where travelers can enjoy low prices and a wide availability of flights to their desired destinations.

How does Cheapflights help users find flights from Manila to Kota Kinabalu?

Cheapflights makes it easy to find Manila to Kota Kinabalu flights by helping our users search from 900+ travel sites for deals. We also provide you with filters for cabin, price, airline, airports, number of stops, and many more to narrow down that perfect flight.

Why should you use Cheapflights to find cheap flight tickets from Manila to Kota Kinabalu?

By finding flights from multiple airlines and providers at completely no cost, Cheapflights helps millions of users like you annually find the best flights to Kota Kinabalu from Manila.

Can Cheapflights find flights from Manila to Kota Kinabalu with no change fees?

Need flexible booking options for your flight to Kota Kinabalu from Manila? Don’t worry, Cheapflights have you covered. Use our search filter to only show flights with no change fees.

Can Cheapflights notify me if prices for flights from Manila to Kota Kinabalu become cheaper?

Yes, Cheapflights offers price alerts on Manila to Kota Kinabalu flights so you can book your travel at the perfect time. Price Alerts can be enabled by clicking the bell icon next to the flight deals above and providing your email address where you want to receive the alerts.

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